User Guide

Welcome to the Napari-OmniEM User Guide.
This guide provides step-by-step instructions for installation, inference workflows, and task/solution management.

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Quick Start

• Getting Started
  Basic concepts, GUI overview, and first-time usage workflow.

• Installation
  Environment setup, dependency requirements, and plugin installation steps.

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Inference Workflows

• In-memory Inference
  Run full-volume inference directly in memory.

• Local Inference
  Perform inference using locally stored data and model weights.

• Sliding Window Parameters
  Configure sliding window inference parameters, overlap strategy, and boundary handling.

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Task and Solution Management

• Task and Solution Manage
  Add, import, enable/disable, export (dump) tasks, and manage solutions.

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Notes

• Disabled tasks do not appear in inference GUI selections.
• Model weights are referenced by path and are not copied automatically.
• Solution metadata cannot be modified after creation.