Getting Started with Napari-OmniEM

This guide provides a quick introduction to Napari-OmniEM and helps you get up and running with your first inference task.

Installation

Currently, Napari-OmniEM is supported only via source installation.
Please follow the instructions in the Installation Guide.

Launch Napari and OmniEM

Launch napari from the command line

napari

Enable the OmniEM plugin

In the napari menu bar, open Plugins and select OmniEM.

select omniem

Load sample EM data

Napari-OmniEM provides built-in sample electron microscopy datasets for quick testing.

  • Load sample files directly from the OmniEM panel:

alt text

  • Alternatively, load your own data via File → Open File(s) in the napari menu.

Interface overview

After loading the plugin and EM data, click the 🔄 Refresh/Register button in the Napari-OmniEM panel to register the currently loaded data.

Once registered and selected a data, the napari interface should appear similar to the following:

alt text

Next Steps

Continue with the detailed user guides to explore OmniEM features: